Updated Upstream (Bukkit/CraftBukkit)

Upstream has released updates that appears to apply and compile correctly.
This update has not been tested by PaperMC and as with ANY update, please do your own testing

Bukkit Changes:
3108e64a SPIGOT-4193: API for selecting entities by strings

CraftBukkit Changes:
ad6070df SPIGOT-4193: API for selecting entities by strings

Spigot-API-Patches/Make-the-default-permission-message-configurable.patch

@@ -5,7 +5,7 @@ Subject: [PATCH] Make the default permission message configurable
 
 
 diff --git a/src/main/java/org/bukkit/Bukkit.java b/src/main/java/org/bukkit/Bukkit.java
-index bd246827..f456f5a0 100644
+index 4acaefa4c..9fab69137 100644
 --- a/src/main/java/org/bukkit/Bukkit.java
 +++ b/src/main/java/org/bukkit/Bukkit.java
 @@ -0,0 +0,0 @@ public final class Bukkit {
@@ -24,7 +24,7 @@ index bd246827..f456f5a0 100644
       * Creates a PlayerProfile for the specified uuid, with name as null
       * @param uuid UUID to create profile for
 diff --git a/src/main/java/org/bukkit/Server.java b/src/main/java/org/bukkit/Server.java
-index 5eb1d371..238f583d 100644
+index c940f6db9..ae15b0e99 100644
 --- a/src/main/java/org/bukkit/Server.java
 +++ b/src/main/java/org/bukkit/Server.java
 @@ -0,0 +0,0 @@ public interface Server extends PluginMessageRecipient {
@@ -41,7 +41,7 @@ index 5eb1d371..238f583d 100644
       * Creates a PlayerProfile for the specified uuid, with name as null
       * @param uuid UUID to create profile for
 diff --git a/src/main/java/org/bukkit/command/Command.java b/src/main/java/org/bukkit/command/Command.java
-index db7f4428..77171cd1 100644
+index db7f44289..77171cd17 100644
 --- a/src/main/java/org/bukkit/command/Command.java
 +++ b/src/main/java/org/bukkit/command/Command.java
 @@ -0,0 +0,0 @@ public abstract class Command {