Update upstream B/CB/S

Adds /paper command for reloading the paper config.
Closes GH-639

Per-world config logging has been removed in favor of all or nothing
logging for all paper settings. I don't believe it was used enough to
warrant maintaining. If this is not the case it should be possible to
re-add it.

Spigot-Server-Patches/Default-loading-permissions.yml-before-plugins.patch

@@ -16,7 +16,7 @@ modify that. Under the previous logic, plugins were unable (cleanly) override pe
 A config option has been added for those who depend on the previous behavior, but I don't expect that.
 
 diff --git a/src/main/java/com/destroystokyo/paper/PaperConfig.java b/src/main/java/com/destroystokyo/paper/PaperConfig.java
-index 0000000000000000000000000000000000000000..0000000000000000000000000000000000000000 100644
+index 797f794de..7f02ac219 100644
 --- a/src/main/java/com/destroystokyo/paper/PaperConfig.java
 +++ b/src/main/java/com/destroystokyo/paper/PaperConfig.java
 @@ -0,0 +0,0 @@ public class PaperConfig {
@@ -30,7 +30,7 @@ index 0000000000000000000000000000000000000000..00000000000000000000000000000000
 +    }
  }
 diff --git a/src/main/java/org/bukkit/craftbukkit/CraftServer.java b/src/main/java/org/bukkit/craftbukkit/CraftServer.java
-index 0000000000000000000000000000000000000000..0000000000000000000000000000000000000000 100644
+index c61752bc3..e2afd9d93 100644
 --- a/src/main/java/org/bukkit/craftbukkit/CraftServer.java
 +++ b/src/main/java/org/bukkit/craftbukkit/CraftServer.java
 @@ -0,0 +0,0 @@ public final class CraftServer implements Server {